Annotation of Ehrlichial Genomes   Return to Lab Homepage
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  Note:
  • The genome sequence and annotated database of Neorickettsia sennetsu are from TIGR.
  • The genome sequenceand annotated databases of Ehrlichia chaffeensis are based on sequences from TIGR (complete genome sequence - 1,174,605 bps) or University of Oklahoma Health Sciences Center (6-fold coverage - 1,089,864 bps, or ~ 93% of the genome).
  • ORFs in E. chaffeensis genome from OUHSC is identified by Artemis 7.0 from Sanger Institute. Sequences are then submited to NCBI blast server, and only significant homologs with E < 10-5 are used to identidy the homolog gene.
  • Deduced protein sequences are compared to COG database to determine its functional categories or pathways.